6E3Y Signaling Protein date Jul 16, 2018
title Cryo-Em Structure Of The Active, Gs-Protein Complexed, Human Receptor
authors Y.L.Liang, M.Khoshouei, G.Deganutti, A.Glukhova, C.Koole, T.S.Pea M.Radjainia, J.M.Plitzko, W.Baumeister, L.J.Miller, D.L.Hay, A.Christopoulos, C.A.Reynolds, D.Wootten, P.M.Sexton
compound source
Molecule: Calcitonin Gene-Related Peptide 1
Chain: P
Fragment: Residues 83-119
Synonym: Alpha-Type Cgrp,Calcitonin Gene-Related Peptide I,
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Nanobody 35
Chain: N
Engineered: Yes
Organism_scientific: Lama Glama
Organism_common: Llama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Guanine Nucleotide-Binding Protein G(S) Subunit A Isoforms Short;
Chain: A
Synonym: Adenylate Cyclase-Stimulating G Alpha Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnas, Gnas1, Gsp
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(T) Beta-1;
Chain: B
Synonym: Transducin Beta Chain 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gnb1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Guanine Nucleotide-Binding Protein G(I)G(S)G(O) Gamma-2;
Chain: G
Synonym: G Gamma-I
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gng2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Calcitonin Gene-Related Peptide Type 1 Receptor
Chain: R
Synonym: Cgrp Type 1 Receptor,Calcitonin Receptor-Like Rece
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Calcrl, Cgrpr
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Receptor Activity-Modifying Protein 1
Chain: E
Synonym: Calcitonin-Receptor-Like Receptor Activity-Modifyi 1,Crlr Activity-Modifying Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ramp1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • G-protein coupled acetylchol...

    • E


    G


    P


    R


    Primary referenceCryo-EM structure of the active, Gs-protein complexed, human CGRP receptor., Liang YL, Khoshouei M, Deganutti G, Glukhova A, Koole C, Peat TS, Radjainia M, Plitzko JM, Baumeister W, Miller LJ, Hay DL, Christopoulos A, Reynolds CA, Wootten D, Sexton PM, Nature. 2018 Sep 12. pii: 10.1038/s41586-018-0535-y. doi:, 10.1038/s41586-018-0535-y. PMID:30209400
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (6e3y.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 6E3Y
  • CSU: Contacts of Structural Units for 6E3Y
  • Retrieve 6E3Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E3Y from S2C, [Save to disk]
    • View 6E3Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6E3Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e3y_A] [6e3y_P] [6e3y_R] [6e3y_B] [6e3y_G] [6e3y_E] [6e3y_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6E3Y
  • Community annotation for 6E3Y at PDBWiki (http://pdbwiki.org)

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