6E5G Transcription Inhibitor date Jul 20, 2018
title Crystal Structure Of Human Tead2-Yap Binding Domain Covalent To An Allosteric Regulator
authors K.Bum-Erdene, G.Gonzalez-Gutierrez, S.O.Meroueh
compound source
Molecule: Transcriptional Enhancer Factor Tef-4
Chain: B, A
Synonym: Tea Domain Family Member 2, Tead-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead2, Tef4
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.757 61.226 79.839 90.00 116.89 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand HUY enzyme
Primary referenceSmall-Molecule Covalent Modification of Conserved Cysteine Leads to Allosteric Inhibition of the TEADYap Protein-Protein Interaction., Bum-Erdene K, Zhou D, Gonzalez-Gutierrez G, Ghozayel MK, Si Y, Xu D, Shannon HE, Bailey BJ, Corson TW, Pollok KE, Wells CD, Meroueh SO, Cell Chem Biol. 2018 Dec 18. pii: S2451-9456(18)30432-X. doi:, 10.1016/j.chembiol.2018.11.010. PMID:30581134
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (6e5g.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (6e5g.pdb2.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 6E5G
  • CSU: Contacts of Structural Units for 6E5G
  • Structure Factors (718 Kb)
  • Retrieve 6E5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E5G from S2C, [Save to disk]
    • View 6E5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6E5G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e5g_A] [6e5g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6E5G
  • Community annotation for 6E5G at PDBWiki (http://pdbwiki.org)

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