6E5X Viral Protein date Jul 23, 2018
title Crystal Structure Of Ebola Virus Vp30 C-Terminusrbbp6 Pepti
authors D.Liu, G.I.Small, D.W.Leung, G.K.Amarasinghe
compound source
Molecule: Minor Nucleoprotein Vp30
Chain: A
Fragment: C-Terminal Domain (Unp Residues 140-266)
Synonym: Transcription Activator Vp30
Engineered: Yes
Organism_scientific: Zaire Ebolavirus (Strain Kikwit-95)
Organism_common: Zebov
Organism_taxid: 128951
Strain: Kikwit-95
Gene: Vp30
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: E3 Ubiquitin-Protein Ligase Rbbp6
Chain: B
Fragment: Unp Residues 554-568
Synonym: Proliferation Potential-Related Protein, Protein P Ring-Type E3 Ubiquitin Transferase Rbbp6, Retinoblastoma-Bi Protein 1, Rbq-1, Retinoblastoma-Binding Protein 6, P53-Ass Cellular Protein Of Testis;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.189 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.600 45.600 158.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA enzyme
Primary referenceProtein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication., Batra J, Hultquist JF, Liu D, Shtanko O, Von Dollen J, Satkamp L, Jang GM, Luthra P, Schwarz TM, Small GI, Arnett E, Anantpadma M, Reyes A, Leung DW, Kaake R, Haas P, Schmidt CB, Schlesinger LS, LaCount DJ, Davey RA, Amarasinghe GK, Basler CF, Krogan NJ, Cell. 2018 Dec 13;175(7):1917-1930.e13. doi: 10.1016/j.cell.2018.08.044. PMID:30550789
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (6e5x.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 6E5X
  • CSU: Contacts of Structural Units for 6E5X
  • Structure Factors (730 Kb)
  • Retrieve 6E5X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E5X from S2C, [Save to disk]
  • View 6E5X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E5X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e5x_A] [6e5x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E5X
  • Community annotation for 6E5X at PDBWiki (http://pdbwiki.org)

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