6E8N	Lipid Binding Protein	date	Jul 30, 2018
title	Crystal Structure Of Glycosylated Human Epdr1
authors	Y.Wei, G.G.Prive
compound		source
Molecule: Mammalian Ependymin-Related Protein 1 Chain: A, B Synonym: Merp-1,Upregulated In Colorectal Cancer Gene 1 Pro Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Epdr1, Merp1, Ucc1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnti- Expression_system_atcc_number: Crl-3022 Expression_system_plasmid: Pb-T-Paf
symmetry	Space Group: C 2 2 21	R_factor 0.220 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.107 136.399 75.908 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	2PE	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of human lysosomal EPDR1 reveal homology with the superfamily of bacterial lipoprotein transporters., Wei Y, Xiong ZJ, Li J, Zou C, Cairo CW, Klassen JS, Prive GG, Commun Biol. 2019 Feb 5;2:52. doi: 10.1038/s42003-018-0262-9. eCollection 2019. PMID:30729188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (6e8n.pdb1.gz) 129 Kb LPC: Ligand-Protein Contacts for 6E8N CSU: Contacts of Structural Units for 6E8N Structure Factors (195 Kb) Retrieve 6E8N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6E8N from S2C, [Save to disk]

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Visual 3D analysis of 6E8N

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6e8n_A] [6e8n_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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