6E90 Oxidoreductase date Jul 31, 2018
title Ternary Complex Of Human Glycerol 3-Phosphate Dehydrogenase
authors L.S.Mydy, A.M.Gulick
compound source
Molecule: Glycerol-3-Phosphate Dehydrogenase [Nad(+)], Cyto
Chain: A, B, C, D
Synonym: Gpdh-C
Ec: 1.1.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.940 79.560 85.060 63.87 86.60 83.61
method X-Ray Diffractionresolution 2.05 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHuman Glycerol 3-Phosphate Dehydrogenase: X-Ray Crystal Structures that Guide the Interpretation of Mutagenesis Studies., Mydy LS, Cristobal JR, Katigbak RD, Bauer P, Reyes AC, Kamerlin SCL, Richard JP, Gulick AM, Biochemistry. 2019 Jan 14. doi: 10.1021/acs.biochem.8b01103. PMID:30640445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]
  • Biological Unit Coordinates (6e90.pdb1.gz) 206 Kb
  • Biological Unit Coordinates (6e90.pdb2.gz) 202 Kb
  • CSU: Contacts of Structural Units for 6E90
  • Structure Factors (3991 Kb)
  • Retrieve 6E90 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E90 from S2C, [Save to disk]
  • View 6E90 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E90
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6e90 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e90_A] [6e90_B] [6e90_C] [6e90_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E90
  • Community annotation for 6E90 at PDBWiki (http://pdbwiki.org)

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