6E9L Transferase Transferase Inhibitor date Aug 01, 2018
title Crystal Structure Of Protein Kinase A In Complex With The Pk And A Pyridinylbenzamide Based Inhibitor
authors R.A.Judge, A.D.Hobson
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Prkaca
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pki Peptide
Chain: B
Synonym: Pki-Alpha,Camp-Dependent Protein Kinase Inhibitor, Musclebrain Isoform;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.085 74.486 79.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand J0P, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceIdentification of Selective Dual ROCK1 and ROCK2 Inhibitors Using Structure Based Drug Design., Hobson AD, Judge RA, Aguirre AL, Brown BS, Cui Y, Ding P, Dominguez E, DiGiammarino E, Egan DA, Freiberg GM, Gopalakrishnan SM, Harris CM, Honore MP, Kage KL, Kapecki NJ, Ling C, Ma J, Mack H, Mamo M, Maurus S, McRae B, Moore NS, Mueller BK, Mueller R, Namovic MT, Patel K, Pratt SD, Putman CB, Queeney KL, Sarris KK, Schaffter LM, Stoll VS, Vasudevan A, Wang L, Wang L, Wirthl W, Yach K, J Med Chem. 2018 Nov 1. doi: 10.1021/acs.jmedchem.8b01098. PMID:30384606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (6e9l.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 6E9L
  • CSU: Contacts of Structural Units for 6E9L
  • Structure Factors (374 Kb)
  • Retrieve 6E9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E9L from S2C, [Save to disk]
    • View 6E9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6E9L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e9l_A] [6e9l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6E9L
  • Community annotation for 6E9L at PDBWiki (http://pdbwiki.org)

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