6EAQ Immune System date Aug 03, 2018
title Glycosylated Fcgr3b Cd16b In Complex With Afucosylated Igg
authors J.T.Roberts, A.W.Barb
compound source
Molecule: Immunoglobulin Gamma-1 Heavy Chain
Chain: A, B
Synonym: Immunoglobulin Gamma-1 Heavy Chain Nie
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f

Molecule: Low Affinity Immunoglobulin Gamma Fc Region Recep
Chain: C
Synonym: Fc-Gamma Riii-Beta,Fcriiib,Fcr-10,Igg Fc Receptor
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fcgr3b, Cd16b, Fcg3, Fcgr3, Igfr3
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Lec1(--)
symmetry Space Group: C 1 2 1
R_factor 0.213 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.629 49.388 139.415 90.00 103.04 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand BMA, GAL, MAN, NAG enzyme
Primary referenceA single amino acid distorts the Fc gamma receptor IIIb / CD16b structure upon binding immunoglobulin G1 and reduces affinity relative to CD16a., Roberts JT, Barb AW, J Biol Chem. 2018 Oct 25. pii: RA118.005273. doi: 10.1074/jbc.RA118.005273. PMID:30361439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (6eaq.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 6EAQ
  • CSU: Contacts of Structural Units for 6EAQ
  • Structure Factors (2454 Kb)
  • Retrieve 6EAQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EAQ from S2C, [Save to disk]
  • View 6EAQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EAQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eaq_B] [6eaq_C] [6eaq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EAQ
  • Community annotation for 6EAQ at PDBWiki (http://pdbwiki.org)

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