6EBD Oxidoreductase date Aug 06, 2018
title Ohrb (Organic Hydroperoxide Resistance Protein) Mutant (C60a Chromobacterium Violaceum, Interacting With Dihydrolipoamid
authors R.M.Domingos, R.D.Teixeira, T.G.P.Alegria, P.S.Vieira, M.T.Murak L.E.S.Netto
compound source
Molecule: Organic Hydroperoxide Resistance Protein
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
 Organism_scientific: Chromobacterium Violaceum
Organism_taxid: 536
Gene: Cbw21_15220
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 61
R_factor 0.194 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.675 87.675 179.609 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.61 Å
ligand CL, J3S enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (6ebd.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (6ebd.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 6EBD
  • CSU: Contacts of Structural Units for 6EBD
  • Structure Factors (685 Kb)
  • Retrieve 6EBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EBD from S2C, [Save to disk]
    • View 6EBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EBD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ebd_B] [6ebd_A] [6ebd_C] [6ebd_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EBD
  • Community annotation for 6EBD at PDBWiki (http://pdbwiki.org)

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