6EDT Transcription Dna date Aug 10, 2018
title Mycobacterium Tuberculosis Rnap Open Promoter Complex With R And Ap3 Promoter
authors S.A.Darst, E.A.Campbell, H.Boyaci Selcuk, J.Chen
compound source
Molecule: Dna-Directed Rna Polymerase Subunit Alpha
Chain: A, B
Synonym: Rnap Subunit Alpha,Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha;
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: C
Synonym: Rnap Subunit Beta,Rna Polymerase Subunit Beta,Tran Subunit Beta;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpob, Samea2682864_01701
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Beta'
Chain: D
Synonym: Rnap Subunit Beta',Rna Polymerase Subunit Beta', Transcriptase Subunit Beta';
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna-Directed Rna Polymerase Subunit Omega
Chain: E
Synonym: Rnap Omega Subunit,Rna Polymerase Omega Subunit, Transcriptase Subunit Omega;
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rpoz, Ers007672_03979, Ers007703_04032, Ers007720_047 Ers027652_00548, Ers027654_02543, Ers027656_03959, Ers12436
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Polymerase Sigma Factor Siga
Chain: F
Synonym: Sigma-A
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Siga, Mysa, Rpod, Rpov
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna Polymerase-Binding Protein Rbpa
Chain: J
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Rbpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (65-Mer)
Chain: O
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Dna (65-Mer)
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773

Molecule: Rna Polymerase-Binding Transcription Factor Card
Chain: M
Engineered: Yes

Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Card
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution NULL Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


  • J


    M


    Primary referenceStructures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding., Boyaci H, Chen J, Jansen R, Darst SA, Campbell EA, Nature. 2019 Jan;565(7739):382-385. doi: 10.1038/s41586-018-0840-5. Epub 2019 Jan, 9. PMID:30626968
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (551 Kb) [Save to disk]
  • Biological Unit Coordinates (6edt.pdb1.gz) 542 Kb
  • LPC: Ligand-Protein Contacts for 6EDT
  • CSU: Contacts of Structural Units for 6EDT
  • Retrieve 6EDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EDT from S2C, [Save to disk]
  • View 6EDT in 3D
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  • Visual 3D analysis of 6EDT
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6edt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6edt_C] [6edt_F] [6edt_D] [6edt_P] [6edt_J] [6edt_M] [6edt_B] [6edt_A] [6edt_O] [6edt_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EDT
  • Community annotation for 6EDT at PDBWiki (http://pdbwiki.org)

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