6EEE Hydrolase Hydrolase Inhibitor date Aug 13, 2018
title X-Ray Crystal Structure Of Pf-M17 In Complex With Inhibitor Regulatory Zinc Ion
authors N.Drinkwater, S.Mcgowan
compound source
Molecule: M17 Leucyl-Aminopeptidase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
Mutation: Yes
 Organism_scientific: Plasmodium Falciparum (Isolate Hb3)
Organism_taxid: 137071
Strain: Isolate Hb3
Gene: Pfhg_04072
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.680 177.395 229.445 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 1PE, 2PE, CO3, DMS, EDO, J4V, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceHydroxamic acid inhibitors provide cross-species inhibition of Plasmodium M1 and M17 aminopeptidases., Vinh NB, Drinkwater N, Malcolm TR, Kassiou M, Lucantoni L, Grin PM, Butler GS, Duffy S, Overall CM, Avery VM, Scammells PJ, McGowan S, J Med Chem. 2018 Dec 11. doi: 10.1021/acs.jmedchem.8b01310. PMID:30537832
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (997 Kb) [Save to disk]
  • Biological Unit Coordinates (6eee.pdb1.gz) 497 Kb
  • Biological Unit Coordinates (6eee.pdb2.gz) 498 Kb
  • LPC: Ligand-Protein Contacts for 6EEE
  • CSU: Contacts of Structural Units for 6EEE
  • Structure Factors (14776 Kb)
  • Retrieve 6EEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EEE from S2C, [Save to disk]
    • View 6EEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eee_A] [6eee_H] [6eee_C] [6eee_G] [6eee_E] [6eee_D] [6eee_K] [6eee_I] [6eee_B] [6eee_F] [6eee_J] [6eee_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EEE
  • Community annotation for 6EEE at PDBWiki (http://pdbwiki.org)

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