6EEL Metal Binding Protein date Aug 14, 2018
title Crystal Structure Of Myoferlin C2a With Divalent Cation
authors R.B.Sutton, F.M.Harsini, A.M.Rice
compound source
Molecule: Myoferlin
Chain: A, B, C
Fragment: Residues 1-125
Synonym: Fer-1-Like Protein 3
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myof, Fer1l3, Kiaa1207
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P202
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.350 83.110 94.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand SR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural Basis for the Distinct Membrane Binding Activity of the Homologous C2A Domains of Myoferlin and Dysferlin., Harsini FM, Bui AA, Rice AM, Chebrolu S, Fuson KL, Turtoi A, Bradberry M, Chapman ER, Sutton RB, J Mol Biol. 2019 Apr 18. pii: S0022-2836(19)30188-3. doi:, 10.1016/j.jmb.2019.04.006. PMID:31004665
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (6eel.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (6eel.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (6eel.pdb3.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 6EEL
  • CSU: Contacts of Structural Units for 6EEL
  • Structure Factors (600 Kb)
  • Retrieve 6EEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EEL from S2C, [Save to disk]
    • View 6EEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EEL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eel_C] [6eel_A] [6eel_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EEL
  • Community annotation for 6EEL at PDBWiki (http://pdbwiki.org)

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