6EHT Dna Binding Protein date Sep 15, 2017
title Modulation Of Pcna Sliding Surface By P15paf Suggests A Supp Mechanism For Cisplatin-Induced Dna Lesion Bypass By Pol Et Holoenzyme
authors M.De March, S.Barrera-Vilarmau, E.Mentegari, N.Merino, E.Bressan R.Crehuet, S.Onesti, F.J.Blanco, A.De Biasio
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, B
Synonym: Pcna,Cyclin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333

Molecule: Proliferating Cell Nuclear Antigen
Chain: C
Synonym: Pcna,Cyclin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli O103:H2 Str. 12009
Expression_system_taxid: 585395

Molecule: Pcna-Associated Factor
Chain: D, E
Synonym: Hepatitis C Virus Ns5a-Transactivated Protein 9,Hc Transactivated Protein 9,Overexpressed In Anaplastic Thyroi Carcinoma 1,Oeatc-1,Pcna-Associated Factor Of 15 Kda,P15paf Clamp-Associated Factor;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Paptpapcpgpaptpgpgpg)-3')
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Pcpcpcpaptpcpgptpapt)-3')
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.261 R_Free 0.327
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.993 42.300 141.827 90.00 102.70 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referencep15PAF binding to PCNA modulates the DNA sliding surface., De March M, Barrera-Vilarmau S, Crespan E, Mentegari E, Merino N, Gonzalez-Magana A, Romano-Moreno M, Maga G, Crehuet R, Onesti S, Blanco FJ, De Biasio A, Nucleic Acids Res. 2018 Aug 8. pii: 5068262. doi: 10.1093/nar/gky723. PMID:30102405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk]
  • Biological Unit Coordinates (6eht.pdb1.gz) 244 Kb
  • CSU: Contacts of Structural Units for 6EHT
  • Structure Factors (667 Kb)
  • Retrieve 6EHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EHT from S2C, [Save to disk]
  • View 6EHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EHT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eht_D] [6eht_C] [6eht_B] [6eht_G] [6eht_F] [6eht_E] [6eht_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EHT
  • Community annotation for 6EHT at PDBWiki (http://pdbwiki.org)

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