6EI1	Hydrolase	date	Sep 16, 2017
title	Crystal Structure Of The Covalent Complex Between Deubiquiti (Zup1) And Ubiquitin-Pa
authors	C.Pichlo, U.Baumann, K.Hofmann, T.Hermanns
compound		source
Molecule: Zinc Finger With Ufm1-Specific Peptidase Domain P Chain: A Fragment: Unp Residues 232-578 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zufsp, C6orf113 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Plyss
Molecule: Polyubiquitin-B Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta Plyss
symmetry	Space Group: P 65 2 2	R_factor 0.171 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.230 84.230 201.780 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.73 Å
ligand	AYE, GOL, MLI	enzyme
Primary reference	A family of unconventional deubiquitinases with modular chain specificity determinants., Hermanns T, Pichlo C, Woiwode I, Klopffleisch K, Witting KF, Ovaa H, Baumann U, Hofmann K, Nat Commun. 2018 Feb 23;9(1):799. doi: 10.1038/s41467-018-03148-5. PMID:29476094

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk] Biological Unit Coordinates (6ei1.pdb1.gz) 207 Kb LPC: Ligand-Protein Contacts for 6EI1 CSU: Contacts of Structural Units for 6EI1 Structure Factors (383 Kb) Retrieve 6EI1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6EI1 from S2C, [Save to disk]

View 6EI1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6EI1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n6ei1, region I:763-853 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ei1_A] [6ei1_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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