6EJ9 Transferase date Sep 20, 2017
title Human Xylosyltransferase 1 In Complex With Peptide Qepegsggg
authors D.C.Briggs, E.Hohenester
compound source
Molecule: Xylosyltransferase 1
Chain: A
Synonym: Peptide O-Xylosyltransferase 1,Xylosyltransferase
Ec: 2.4.2.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xylt1, Xt1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
Expression_system_plasmid: Pcep-Pu

Molecule: Protein Ambp
Chain: B
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.380 86.820 153.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.02 Å
ligand
enzyme Transferase E.C.2.4.2.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1., Briggs DC, Hohenester E, Structure. 2018 Apr 10. pii: S0969-2126(18)30095-9. doi:, 10.1016/j.str.2018.03.014. PMID:29681470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (349 Kb) [Save to disk]
  • Biological Unit Coordinates (6ej9.pdb1.gz) 342 Kb
  • CSU: Contacts of Structural Units for 6EJ9
  • Structure Factors (1607 Kb)
  • Retrieve 6EJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EJ9 from S2C, [Save to disk]
  • View 6EJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EJ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ej9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ej9_A] [6ej9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EJ9
  • Community annotation for 6EJ9 at PDBWiki (http://pdbwiki.org)

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