6EJA Transferase date Sep 20, 2017
title Human Xylosyltransferase 1 In Complex With Peptide Qeeeysggg
authors D.C.Briggs, E.Hohenester
compound source
Molecule: Xylosyltransferase 1
Chain: A
Fragment: Unp Residues 232-959
Synonym: Peptide O-Xylosyltransferase 1,Xylosyltransferase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xylt1, Xt1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293fs
Expression_system_plasmid: Pcep-Pu

Molecule: Protein Ambp
Chain: B
Fragment: Unp Residues 210-221
Synonym: Bikunin
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.213
length a length b length c angle alpha angle beta angle gamma
66.560 85.960 151.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
enzyme Transferase E.C. BRENDA

Primary referenceStructural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1., Briggs DC, Hohenester E, Structure. 2018 Apr 10. pii: S0969-2126(18)30095-9. doi:, 10.1016/j.str.2018.03.014. PMID:29681470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (348 Kb) [Save to disk]
  • Biological Unit Coordinates (6eja.pdb1.gz) 342 Kb
  • CSU: Contacts of Structural Units for 6EJA
  • Structure Factors (1754 Kb)
  • Retrieve 6EJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EJA from S2C, [Save to disk]
  • View 6EJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EJA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6eja from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eja_A] [6eja_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EJA
  • Community annotation for 6EJA at PDBWiki (http://pdbwiki.org)

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