6EKK	Transcription	date	Sep 26, 2017
title	Crystal Structure Of Gef Domain Of Dennd 1a In Complex With Rab35-Gdp Bound State.
authors	V.Srikannathasan, A.Szykowska, C.Tallant, C.Strain-Damerell, J.K K.Kupinska, S.Mukhopadhyay, M.Gavin, D.Wang, R.Chalk, N.A.Burges C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, K.Huber
compound		source
Molecule: Denn Domain-Containing Protein 1a Chain: A, B Synonym: Connecdenn 1,Connecdenn,Protein Fam31a Engineered: Yes Other_details: Chain A- Dennd1aa (Uniprot Q8teh3) Chain B- (Uniprot - Q15286);		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dennd1a, Fam31a, Kiaa1608 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-Ct10hf-Lic
Molecule: Ras-Related Protein Rab-35 Chain: C, D Synonym: Gtp-Binding Protein Ray,Ras-Related Protein Rab-1c Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab35, Rab1c, Ray Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell: Escherichia Coli Bl21 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 1	R_factor 0.194 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.700 67.990 101.710 80.50 76.80 67.06
method	X-Ray Diffraction	resolution	1.82 Å
ligand	EDO, GDP, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B D, C

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk] Biological Unit Coordinates (6ekk.pdb1.gz) 192 Kb Biological Unit Coordinates (6ekk.pdb2.gz) 197 Kb LPC: Ligand-Protein Contacts for 6EKK CSU: Contacts of Structural Units for 6EKK Structure Factors (2982 Kb) Retrieve 6EKK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6EKK from S2C, [Save to disk]

View 6EKK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6EKK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ekk_D] [6ekk_C] [6ekk_A] [6ekk_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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