6EMH Transferase date Oct 02, 2017
title Crystal Structure Of Jnk3 In Complex With A Pyridinylimidazo Inhibitor
authors J.T.Macedo, T.Stehle, B.S.Blaum
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A, B, C, D
Synonym: Mapk 10,Map Kinase P49 3f12,Stress-Activated Prote 1b,Sapk1b,Stress-Activated Protein Kinase Jnk3,C-Jun N-Term Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10, Sapk1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.560 114.260 157.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand BGE, BME, C15, CL, EDO, GOL, PEG enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Optimization of a Pyridinylimidazole Scaffold: Shifting the Selectivity from p38alpha Mitogen-Activated Protein Kinase to c-Jun N-Terminal Kinase 3., Ansideri F, Macedo JT, Eitel M, El-Gokha A, Zinad DS, Scarpellini C, Kudolo M, Schollmeyer D, Boeckler FM, Blaum BS, Laufer SA, Koch P, ACS Omega. 2018 Jul 31;3(7):7809-7831. doi: 10.1021/acsomega.8b00668. Epub 2018, Jul 12. PMID:30087925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (483 Kb) [Save to disk]
  • Biological Unit Coordinates (6emh.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (6emh.pdb2.gz) 125 Kb
  • Biological Unit Coordinates (6emh.pdb3.gz) 119 Kb
  • Biological Unit Coordinates (6emh.pdb4.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 6EMH
  • CSU: Contacts of Structural Units for 6EMH
  • Structure Factors (1246 Kb)
  • Retrieve 6EMH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EMH from S2C, [Save to disk]
  • View 6EMH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EMH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6emh_A] [6emh_D] [6emh_C] [6emh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EMH
  • Community annotation for 6EMH at PDBWiki (http://pdbwiki.org)

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