6EML Ribosome date Oct 02, 2017
title Cryo-Em Structure Of A Late Pre-40s Ribosomal Subunit From Saccharomyces Cerevisiae
authors A.Heuer, E.Thomson, C.Schmidt, O.Berninghausen, T.Becker, E.Hurt, R.Beckmann
compound source
Molecule: Pre-18s Ribosomal Rna
Chain: 2
Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S12
Chain: D
Synonym: Small Ribosomal Subunit Protein Es12

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S5
Chain: B
Synonym: Rp14,S2,Small Ribosomal Subunit Protein Us7,Ys8

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S17-A
Chain: C
Synonym: Rp51a,Small Ribosomal Subunit Protein Es17-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S15
Chain: E
Synonym: Rig Protein,Rp52,S21,Small Ribosomal Subunit Prote Ys21;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S16-A
Chain: F
Synonym: Rp61r,Small Ribosomal Subunit Protein Us9-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S18-A
Chain: H
Synonym: Small Ribosomal Subunit Protein Us13-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S19-A
Chain: I
Synonym: Rp55a,S16a,Small Ribosomal Subunit Protein Es19-A, Ys16a;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S25-A
Chain: K
Synonym: Rp45,S31,Small Ribosomal Subunit Protein Es25-A,Ys

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S28-B
Chain: L
Synonym: S33,Small Ribosomal Subunit Protein Es28-B,Ys27

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Ubiquitin-40s Ribosomal Protein S31
Chain: N

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S0-A
Chain: P
Synonym: Nucleic Acid-Binding Protein Nab1a,Small Ribosomal Protein Us2-A;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S1-A
Chain: Q
Synonym: Rp10a,Small Ribosomal Subunit Protein Es1-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S2
Chain: R
Synonym: Omnipotent Suppressor Protein Sup44,Rp12,S4,Small Subunit Protein Us5,Ys5;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S4-A
Chain: S
Synonym: Rp5,S7,Small Ribosomal Subunit Protein Es4-A,Ys6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S6-A
Chain: T
Synonym: Rp9,S10,Small Ribosomal Subunit Protein Es6-A,Ys4

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S7-A
Chain: U
Synonym: Rp30,Rp40,Small Ribosomal Subunit Protein Es7-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S8-A
Chain: V
Synonym: Rp19,S14,Small Ribosomal Subunit Protein Es8-A,Ys9

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S9-A
Chain: W
Synonym: Rp21,S13,Small Ribosomal Subunit Protein Us4-A,Yp2

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S11-A
Chain: X
Synonym: Rp41,S18,Small Ribosomal Subunit Protein Us17-A,Ys

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S13
Chain: Y
Synonym: S27a,Small Ribosomal Subunit Protein Us15,Ys15

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S14-A
Chain: Z
Synonym: Rp59a,Small Ribosomal Subunit Protein Us11-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S21-A
Chain: a
Synonym: S26,Small Ribosomal Subunit Protein Es21-A,Ys25

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S22-A
Chain: b
Synonym: Rp50,S24,Small Ribosomal Subunit Protein Us8-A,Yp5

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S23-A
Chain: c
Synonym: Rp37,S28,Small Ribosomal Subunit Protein Us12-A,Ys

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S24-A
Chain: d
Synonym: Rp50,Small Ribosomal Subunit Protein Es24-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S27-A
Chain: f
Synonym: Rp61,Small Ribosomal Subunit Protein Es27-A,Ys20

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Ribosome Biogenesis Protein Tsr1
Chain: t
Synonym: 20s Rrna Accumulation Protein 1

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: 40s Ribosomal Protein S30-A
Chain: g
Synonym: Small Ribosomal Subunit Protein Es30-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Pre-Rrna-Processing Protein Pno1
Chain: p
Synonym: Partner Of Nob1,Ribosomal Rna-Processing Protein 2

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Serinethreonine-Protein Kinase Rio2
Chain: r
Ec: 2.7.11.1

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Essential Nuclear Protein 1
Chain: e

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B

  • cytosolic small ribosomal su...
  • C


    D

  • cytosolic small ribosomal su...
  • E


    F


    H


    I

  • cytosolic small ribosomal su...
  • K

  • cytosolic small ribosomal su...
  • L

  • cytosolic small ribosomal su...
  • N

  • cytosolic small ribosomal su...
  • P


    Q


    R


    S

  • cytosolic small ribosomal su...
  • T

  • cytosolic small ribosomal su...
  • U


    V

  • cytosolic small ribosomal su...
  • W

  • cytosolic small ribosomal su...
  • X

  • cytosolic small ribosomal su...
  • Y

  • cytosolic small ribosomal su...
  • Z


    a

  • cytosolic small ribosomal su...
  • b

  • cytosolic small ribosomal su...
  • c


    d


    e


    f

  • cytosolic small ribosomal su...
  • g


    p


    r


    t


    Primary referenceCryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae., Heuer A, Thomson E, Schmidt C, Berninghausen O, Becker T, Hurt E, Beckmann R, Elife. 2017 Nov 20;6. doi: 10.7554/eLife.30189. PMID:29155690
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1542 Kb) [Save to disk]
  • Biological Unit Coordinates (6eml.pdb1.gz) 1524 Kb
  • CSU: Contacts of Structural Units for 6EML
  • Retrieve 6EML in mmCIF format [Save to disk]
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  • Fold representative 6eml from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eml_T] [6eml_C] [6eml_Q] [6eml_e] [6eml_2] [6eml_P] [6eml_L] [6eml_B] [6eml_a] [6eml_S] [6eml_N] [6eml_t] [6eml_b] [6eml_E] [6eml_I] [6eml_K] [6eml_V] [6eml_X] [6eml_H] [6eml_r] [6eml_c] [6eml_f] [6eml_D] [6eml_R] [6eml_Y] [6eml_p] [6eml_W] [6eml_d] [6eml_F] [6eml_Z] [6eml_U] [6eml_g]
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