6EMP Transcription date Oct 03, 2017
title Solution Structure Of The Ledgfp75 Ibd - Pogz (Aa 1370-1404
authors V.Veverka
compound source
Molecule: Pc4 And Sfrs1-Interacting Protein,Pogo Transposab With Znf Domain;
Chain: A
Synonym: Cll-Associated Antigen Kw-7,Dense Fine Speckles 70 Protein,Dfs 70,Lens Epithelium-Derived Growth Factor,Transc Coactivator P75p52,Suppressor Of Hairy Wing Homolog 5,Zinc Protein 280e,Zinc Finger Protein 635;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psip1, Dfs70, Ledgf, Psip2, Pogz, Kiaa0461, Suhw5, Zn Znf635, Nbla00003;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceAffinity switching of the LEDGF/p75 IBD interactome is governed by kinase-dependent phosphorylation., Sharma S, Cermakova K, De Rijck J, Demeulemeester J, Fabry M, El Ashkar S, Van Belle S, Lepsik M, Tesina P, Duchoslav V, Novak P, Hubalek M, Srb P, Christ F, Rezacova P, Hodges HC, Debyser Z, Veverka V, Proc Natl Acad Sci U S A. 2018 Jul 11. pii: 1803909115. doi:, 10.1073/pnas.1803909115. PMID:29997176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1515 Kb) [Save to disk]
  • Biological Unit Coordinates (6emp.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 6EMP
  • Original NMR restraints for 6EMP from PDB
  • Retrieve 6EMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EMP from S2C, [Save to disk]
  • View 6EMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6emp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6emp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EMP
  • Community annotation for 6EMP at PDBWiki (http://pdbwiki.org)

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