6EOP	Hydrolase	date	Oct 10, 2017
title	Dpp8 - Slrflyeg, Space Group 20
authors	B.R.Ross, R.Huber
compound		source
Molecule: Dipeptidyl Peptidase 8 Chain: A, B, C Synonym: Dp8,Dipeptidyl Peptidase Iv-Related Protein 1,Dprp Dipeptidyl Peptidase Viii,Dpp Viii,Prolyl Dipeptidase Dpp8; Ec: 3.4.14.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpp8, Dprp1, Mstp097, Mstp135, Mstp141 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Ser-Leu-Arg-Phe-Leu-Tyr-Glu-Gly Chain: D, E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: C 2 2 21	R_factor 0.214 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 162.830 246.371 261.191 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CA, CME, F15, FLC	enzyme	Hydrolase E.C.3.4.14.5 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer., Ross B, Krapp S, Augustin M, Kierfersauer R, Arciniega M, Geiss-Friedlander R, Huber R, Proc Natl Acad Sci U S A. 2018 Jan 30. pii: 1717565115. doi:, 10.1073/pnas.1717565115. PMID:29382749

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (430 Kb) [Save to disk] Biological Unit Coordinates (6eop.pdb1.gz) 286 Kb Biological Unit Coordinates (6eop.pdb2.gz) 283 Kb LPC: Ligand-Protein Contacts for 6EOP CSU: Contacts of Structural Units for 6EOP Structure Factors (1748 Kb) Retrieve 6EOP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6EOP from S2C, [Save to disk]

View 6EOP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6EOP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6eop_B] [6eop_D] [6eop_C] [6eop_E] [6eop_F] [6eop_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6EOP

Community annotation for 6EOP at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---