6EOR Hydrolase date Oct 10, 2017
title Dpp9 - 1g244
authors B.R.Ross, R.Huber
compound source
Molecule: Dipeptidyl Peptidase 9
Chain: A, B, C, D
Synonym: Dp9,Dipeptidyl Peptidase Iv-Related Protein 2,Dprp Dipeptidyl Peptidase Ix,Dpp Ix,Dipeptidyl Peptidase-Like Pr Dplp9;
Ec: 3.4.14.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpp9, Dprp2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.265 R_Free 0.332
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.357 117.212 163.396 90.00 105.57 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 9XH enzyme Hydrolase E.C.3.4.14.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer., Ross B, Krapp S, Augustin M, Kierfersauer R, Arciniega M, Geiss-Friedlander R, Huber R, Proc Natl Acad Sci U S A. 2018 Jan 30. pii: 1717565115. doi:, 10.1073/pnas.1717565115. PMID:29382749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (534 Kb) [Save to disk]
  • Biological Unit Coordinates (6eor.pdb1.gz) 267 Kb
  • Biological Unit Coordinates (6eor.pdb2.gz) 267 Kb
  • LPC: Ligand-Protein Contacts for 6EOR
  • CSU: Contacts of Structural Units for 6EOR
  • Structure Factors (818 Kb)
  • Retrieve 6EOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EOR from S2C, [Save to disk]
  • View 6EOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eor_B] [6eor_A] [6eor_C] [6eor_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EOR
  • Community annotation for 6EOR at PDBWiki (http://pdbwiki.org)

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