6EOT	Hydrolase	date	Oct 10, 2017
title	Dpp8 - Slrflyeg, Space Group 19
authors	B.R.Ross, R.Huber
compound		source
Molecule: Dipeptidyl Peptidase 8 Chain: A, B, D, G, I, K Synonym: Dp8,Dipeptidyl Peptidase Iv-Related Protein 1,Dprp Dipeptidyl Peptidase Viii,Dpp Viii,Prolyl Dipeptidase Dpp8; Ec: 3.4.14.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dpp8, Dprp1, Mstp097, Mstp135, Mstp141 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
Molecule: Ser-Leu-Arg-Phe-Leu-Tyr-Glu-Gly Chain: F, C, E, H, J, L Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.159 264.675 268.937 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand		enzyme	Hydrolase E.C.3.4.14.5 BRENDA
Gene Ontology	Chain Function Process Component A, D, K, I, G, B
Primary reference	Structures and mechanism of dipeptidyl peptidases 8 and 9, important players in cellular homeostasis and cancer., Ross B, Krapp S, Augustin M, Kierfersauer R, Arciniega M, Geiss-Friedlander R, Huber R, Proc Natl Acad Sci U S A. 2018 Jan 30. pii: 1717565115. doi:, 10.1073/pnas.1717565115. PMID:29382749

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (818 Kb) [Save to disk] Biological Unit Coordinates (6eot.pdb1.gz) 276 Kb Biological Unit Coordinates (6eot.pdb2.gz) 278 Kb Biological Unit Coordinates (6eot.pdb3.gz) 277 Kb CSU: Contacts of Structural Units for 6EOT Structure Factors (1099 Kb) Retrieve 6EOT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6EOT from S2C, [Save to disk]

View 6EOT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6EOT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6eot_G] [6eot_K] [6eot_D] [6eot_J] [6eot_F] [6eot_H] [6eot_C] [6eot_A] [6eot_E] [6eot_B] [6eot_L] [6eot_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6EOT at PDBWiki (http://pdbwiki.org)

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