6ERF	Dna Binding Protein	date	Oct 18, 2017
title	Complex Of Aplf Factor And Ku Heterodimer Bound To Dna
authors	C.Nemoz, P.Legrand, V.Ropars, J.B.Charbonnier
compound		source
Molecule: X-Ray Repair Cross-Complementing Protein 6 Chain: A, C, E, G Synonym: 5'-Deoxyribose-5-Phosphate Lyase Ku70,5'-Drp Lyase Kda Subunit Of Ku Antigen,Atp-Dependent Dna Helicase 2 Subu Dependent Dna Helicase II 70 Kda Subunit,Ctc Box-Binding Fa Kda Subunit,Ctcbf,Dna Repair Protein Xrcc6,Lupus Ku Autoant Protein P70,Ku70,Thyroid-Lupus Autoantigen,Tlaa,X-Ray Repai Complementing Defective Repair In Chinese Hamster Cells 6; Ec: 3.6.4.-,4.2.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Xrcc6, G22p1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector: Unidentified Baculovirus
Molecule: X-Ray Repair Cross-Complementing Protein 5 Chain: B, D, F, H Synonym: 86 Kda Subunit Of Ku Antigen,Atp-Dependent Dna Hel Subunit 2,Atp-Dependent Dna Helicase II 80 Kda Subunit,Ctc Binding Factor 85 Kda Subunit,Ctcbf,Dna Repair Protein Xrcc Ku86,Lupus Ku Autoantigen Protein P86,Nuclear Factor Iv,Thy Autoantigen,Tlaa,X-Ray Repair Complementing Defective Repai Chinese Hamster Cells 5 (Double-Strand-Break Rejoining); Ec: 3.6.4.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Xrcc5, G22p2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector: Unidentified Baculovirus
Molecule: Dna (5'- D(Gptptptptptpapgptptptpaptptpgpgpgpcpgp 3'); Chain: I, K, M, O Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (34-Mer) Chain: J, L, N, P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Aprataxin And Pnk-Like Factor Chain: Q, R, S, T Synonym: Apurinic-Apyrimidinic Endonuclease Aplf,Pnk And Ap Fha Domain-Containing Protein,Xrcc1-Interacting Protein 1; Ec: 4.2.99.18 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.209 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.920 140.860 150.310 68.64 80.85 81.23
method	X-Ray Diffraction	resolution	3.01 Å
ligand		enzyme	Hydrolase E.C.3.6.4 BRENDA
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D
Primary reference	XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining., Nemoz C, Ropars V, Frit P, Gontier A, Drevet P, Yu J, Guerois R, Pitois A, Comte A, Delteil C, Barboule N, Legrand P, Baconnais S, Yin Y, Tadi S, Barbet-Massin E, Berger I, Le Cam E, Modesti M, Rothenberg E, Calsou P, Charbonnier JB, Nat Struct Mol Biol. 2018 Oct;25(10):971-980. doi: 10.1038/s41594-018-0133-6., Epub 2018 Oct 5. PMID:30291363

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1515 Kb) [Save to disk] Biological Unit Coordinates (6erf.pdb1.gz) 382 Kb Biological Unit Coordinates (6erf.pdb2.gz) 381 Kb Biological Unit Coordinates (6erf.pdb3.gz) 382 Kb Biological Unit Coordinates (6erf.pdb4.gz) 386 Kb CSU: Contacts of Structural Units for 6ERF Structure Factors (4689 Kb) Retrieve 6ERF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6ERF from S2C, [Save to disk]

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Visual 3D analysis of 6ERF

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6erf_D] [6erf_N] [6erf_E] [6erf_J] [6erf_H] [6erf_Q] [6erf_A] [6erf_B] [6erf_M] [6erf_G] [6erf_T] [6erf_F] [6erf_P] [6erf_R] [6erf_C] [6erf_S] [6erf_O] [6erf_L] [6erf_K] [6erf_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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