6EYI Cell Adhesion date Nov 13, 2017
title E-Selectin Lectin, Egf-Like And Two Scr Domains Complexed Wi Glycomimetic Ligand Bw69669
authors R.P.Jakob, P.Zihlmann, R.C.Preston, N.Varga, B.Ernst, T.Maier
compound source
Molecule: E-Selectin
Chain: A
Synonym: Cd62 Antigen-Like Family Member E,Endothelial Leuk Adhesion Molecule 1,Elam-1,Leukocyte-Endothelial Cell Adhes Molecule 2,Lecam2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sele, Elam1
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_organ: Ovary
Expression_system_cell: Cho
Expression_system_plasmid: Pcdna3.1
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.590 72.940 52.520 90.00 94.16 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand C4Z, CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (6eyi.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 6EYI
  • CSU: Contacts of Structural Units for 6EYI
  • Structure Factors (720 Kb)
  • Retrieve 6EYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EYI from S2C, [Save to disk]
    • View 6EYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EYI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eyi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EYI
  • Community annotation for 6EYI at PDBWiki (http://pdbwiki.org)

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