6F0L Hydrolase date Nov 20, 2017
title S. Cerevisiae Mcm Double Hexamer Bound To Duplex Dna
authors F.Abid Ali, V.E.Pye, M.E.Douglas, J.Locke, A.Nans, J.F.X.Diffley,
compound source
Molecule: Dna Replication Licensing Factor Mcm2
Chain: 2, A
Synonym: Minichromosome Maintenance Protein 2
Ec: 3.6.4.12
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm2, Ybl023c, Ybl0438
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm3
Chain: 3, B
Synonym: Minichromosome Maintenance Protein 3
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm3, Yel032w, Sygp-Orf23
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm4
Chain: 4, C
Synonym: Cell Division Control Protein 54
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm4, Cdc54, Hcd21, Ypr019w, Yp9531.13
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Minichromosome Maintenance Protein 5
Chain: 5, D
Synonym: Cell Division Control Protein 46
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm5, Cdc46, Ylr274w, L9328.1
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm6
Chain: 6, E
Synonym: Minichromosome Maintenance Protein 6
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm6, Ygl201c
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm7
Chain: 7, F
Synonym: Cell Division Control Protein 47,Minichromosome Ma Protein 7;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Mcm7, Cdc47, Ybr202w, Ybr1441
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Dna (62-Mer)
Chain: X
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (62-Mer)
Chain: Y
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.77 Å
ligand ADP enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
3, B
  • chromatin silencing at telom...

    • 4, C


    6, E


    A, 2


    D, 5


    F, 7
  • chromatin silencing at telom...

    • Primary referenceCryo-EM structure of a licensed DNA replication origin., Abid Ali F, Douglas ME, Locke J, Pye VE, Nans A, Diffley JFX, Costa A, Nat Commun. 2017 Dec 21;8(1):2241. doi: 10.1038/s41467-017-02389-0. PMID:29269875
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1148 Kb) [Save to disk]
  • Biological Unit Coordinates (6f0l.pdb1.gz) 1125 Kb
  • LPC: Ligand-Protein Contacts for 6F0L
  • CSU: Contacts of Structural Units for 6F0L
  • Retrieve 6F0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F0L from S2C, [Save to disk]
    • View 6F0L in 3D
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    • Visual 3D analysis of 6F0L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f0l_D] [6f0l_C] [6f0l_B] [6f0l_F] [6f0l_7] [6f0l_6] [6f0l_4] [6f0l_X] [6f0l_2] [6f0l_5] [6f0l_3] [6f0l_Y] [6f0l_A] [6f0l_E]
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  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F0L
  • Community annotation for 6F0L at PDBWiki (http://pdbwiki.org)

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