6F1U Motor Protein date Nov 23, 2017
title N Terminal Region Of Dynein Tail Domains In Complex With Dyn Filament And Bicdr-1
authors L.Urnavicius, C.K.Lau, M.M.Elshenawy, E.Morales-Rios, C.Motz, A.Y A.P.Carter
compound source
Molecule: Arp1 Actin Related Protein 1 Homolog A
Chain: B, D, F
Other_details: Adp: Adenosine Diphosphate
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Capping Protein (Actin Filament) Muscle Z-Line, A
Chain: K
Synonym: F-Actin Capping Protein Alpha 1 Subunit,F-Actin Ca Protein Subunit Alpha 1;
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: F-Actin Capping Protein Beta Subunit
Chain: L
Synonym: F-Actin-Capping Protein Subunit Beta,F-Actin-Cappi Subunit Beta Isoform 1;
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Subunit 2
Chain: c
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dynactin Subunit 2
Chain: d
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Cytoplasmic Dynein 1 Heavy Chain 1
Chain: f, m, n
Synonym: Cytoplasmic Dynein Heavy Chain 1,Dynein Heavy Chai Cytosolic;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dync1h1, Dhc1, Dnch1, Dncl, Dnecl, Dyhc, Kiaa0325
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Cytoplasmic Dynein 1 Intermediate Chain 2
Chain: h
Synonym: Cytoplasmic Dynein Intermediate Chain 2,Dynein Int Chain 2,Cytosolic,Dh Ic-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dync1i2, Dnci2, Dncic2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Bicd Family-Like Cargo Adapter 1
Chain: X, x
Synonym: Bicaudal D-Related Protein 1,Bicdr-1,Coiled-Coil D Containing Protein 64a;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Bicdl1, Bicdr1, Ccdc64
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.40 Å
ligand ADP enzyme
Gene
Ontology
ChainFunctionProcessComponent
K


L


X, x


h


n, m, f


Primary referenceCryo-EM shows how dynactin recruits two dyneins for faster movement., Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP, Nature. 2018 Feb 7;554(7691):202-206. doi: 10.1038/nature25462. PMID:29420470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (548 Kb) [Save to disk]
  • Biological Unit Coordinates (6f1u.pdb1.gz) 526 Kb
  • LPC: Ligand-Protein Contacts for 6F1U
  • CSU: Contacts of Structural Units for 6F1U
  • Retrieve 6F1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F1U from S2C, [Save to disk]
    • View 6F1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F1U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f1u_f] [6f1u_B] [6f1u_F] [6f1u_m] [6f1u_D] [6f1u_c] [6f1u_X] [6f1u_d] [6f1u_x] [6f1u_L] [6f1u_K] [6f1u_n] [6f1u_h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F1U
  • Community annotation for 6F1U at PDBWiki (http://pdbwiki.org)

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