6F2K Hydrolase date Nov 24, 2017
title Crystal Structure Of Hen Egg-White Lysozyme Co-Crystallized Presence Of 100 Mm Tb-Xo4 And 100 Mm Potassium Phosphate Mo
authors S.Engilberge, F.Riobe, S.Di Pietro, E.Girard, E.Dumont, O.Maury
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C,Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.198 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.359 78.359 37.404 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, TB enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography., Engilberge S, Riobe F, Wagner T, Di Pietro S, Breyton C, Franzetti B, Shima S, Girard E, Dumont E, Maury O, Chemistry. 2018 Jul 11;24(39):9739-9746. doi: 10.1002/chem.201802172. Epub 2018, Jun 25. PMID:29806881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (6f2k.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 6F2K
  • CSU: Contacts of Structural Units for 6F2K
  • Structure Factors (167 Kb)
  • Retrieve 6F2K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F2K from S2C, [Save to disk]
  • View 6F2K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6F2K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f2k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6F2K
  • Community annotation for 6F2K at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science