OCA Atlas for 6F38

6F38

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP, ATP

enzyme

Gene
Ontology

Chain	Function	Process	Component
H	structural constituent of po...
J		retrograde axonal transport ...
K
L
U
V
c, b, a
f, m, e, n
g, h, o, p
j, q, i, r
k, t, l, s

Primary reference

Cryo-EM shows how dynactin recruits two dyneins for faster movement., Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP, Nature. 2018 Feb 7;554(7691):202-206. doi: 10.1038/nature25462. PMID:29420470

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1336 Kb) [Save to disk]

Biological Unit Coordinates (6f38.pdb1.gz) 1266 Kb

LPC: Ligand-Protein Contacts for 6F38

CSU: Contacts of Structural Units for 6F38

Retrieve 6F38 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6F38 from S2C, [Save to disk]

View 6F38 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6f38_A] [6f38_B] [6f38_C] [6f38_D] [6f38_E] [6f38_F] [6f38_G] [6f38_H] [6f38_I] [6f38_J] [6f38_K] [6f38_L] [6f38_M] [6f38_N] [6f38_O] [6f38_P] [6f38_Q] [6f38_R] [6f38_U] [6f38_V] [6f38_X] [6f38_Y] [6f38_Z] [6f38_a] [6f38_b] [6f38_c] [6f38_d] [6f38_e] [6f38_f] [6f38_g] [6f38_h] [6f38_i] [6f38_j] [6f38_k] [6f38_l] [6f38_m] [6f38_n] [6f38_o] [6f38_p] [6f38_q] [6f38_r] [6f38_s] [6f38_t] [6f38_x] [6f38_z]

SWISS-PROT database:

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