6F3E Signaling Protein date Nov 28, 2017
title Irak4 In Complex With Inhibitor
authors Y.Xue, S.L.Degorce, G.R.Robb, A.D.Ferguson
compound source
Molecule: Interleukin-1 Receptor-Associated Kinase 4
Chain: A, B
Synonym: Irak-4,Renal Carcinoma Antigen Ny-Ren-64
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Irak4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: I 2 2 2
R_factor 0.199 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.181 109.371 141.544 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.67 Å
ligand CJQ, SO4, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOptimization of permeability in a series of pyrrolotriazine inhibitors of IRAK4., Degorce SL, Anjum R, Dillman KS, Drew L, Groombridge SD, Halsall CT, Lenz EM, Lindsay NA, Mayo MF, Pink JH, Robb GR, Scott JS, Stokes S, Xue Y, Bioorg Med Chem. 2018 Feb 15;26(4):913-924. doi: 10.1016/j.bmc.2018.01.008. Epub , 2018 Jan 17. PMID:29398441
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (6f3e.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (6f3e.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 6F3E
  • CSU: Contacts of Structural Units for 6F3E
  • Structure Factors (672 Kb)
  • Retrieve 6F3E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F3E from S2C, [Save to disk]
    • View 6F3E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F3E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f3e_A] [6f3e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F3E
  • Community annotation for 6F3E at PDBWiki (http://pdbwiki.org)

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