6F3T Transcription date Nov 28, 2017
title Crystal Structure Of The Human Taf5-Taf6-Taf9 Complex
authors M.Haffke, I.Berger
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 5
Chain: A, B, C, D
Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Tafii100;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf5, Taf2d
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: E, G, I, K
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Tafii7 Transcription Initiation Factor Tfiid 80 Kda Subunit,Tafii8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf6, Taf2e, Tafii70
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Transcription Initiation Factor Tfiid Subunit 9
Chain: F, H, J, L
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii3 Transcription Initiation Factor Tfiid 32 Kda Subunit,Tafii3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf9, Taf2g, Tafii31
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: I 2 3
R_factor 0.197 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
339.050 339.050 339.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
F, J, H, L


K, E, I, G


Primary referenceChaperonin CCT checkpoint function in basal transcription factor TFIID assembly., Antonova SV, Haffke M, Corradini E, Mikuciunas M, Low TY, Signor L, van Es RM, Gupta K, Scheer E, Vos HR, Tora L, Heck AJR, Timmers HTM, Berger I, Nat Struct Mol Biol. 2018 Dec;25(12):1119-1127. doi: 10.1038/s41594-018-0156-z., Epub 2018 Dec 3. PMID:30510221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1539 Kb) [Save to disk]
  • Biological Unit Coordinates (6f3t.pdb1.gz) 387 Kb
  • Biological Unit Coordinates (6f3t.pdb2.gz) 383 Kb
  • Biological Unit Coordinates (6f3t.pdb3.gz) 385 Kb
  • Biological Unit Coordinates (6f3t.pdb4.gz) 387 Kb
  • CSU: Contacts of Structural Units for 6F3T
  • Structure Factors (1923 Kb)
  • Retrieve 6F3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F3T from S2C, [Save to disk]
  • View 6F3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6F3T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6f3t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f3t_K] [6f3t_J] [6f3t_A] [6f3t_F] [6f3t_G] [6f3t_I] [6f3t_C] [6f3t_H] [6f3t_D] [6f3t_L] [6f3t_E] [6f3t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6F3T
  • Community annotation for 6F3T at PDBWiki (http://pdbwiki.org)

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