6F44 Transcription date Nov 29, 2017
title Rna Polymerase III Closed Complex Cc2.
authors M.K.Vorlaender, H.Khatter, R.Wetzel, W.J.H.Hagen, C.W.Mueller
compound source
Molecule: Dna-Directed Rna Polymerase III Subunit Rpc1
Chain: A
Synonym: Rna Polymerase III Subunit C1,Dna-Directed Rna Pol III Largest Subunit,Rna Polymerase III Subunit C160;
Ec: 2.7.7.6
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc2
Chain: B
Synonym: Rna Polymerase III Subunit C2,C128,Dna-Directed Rn Polymerase III 130 Kda Polypeptide;
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp
Chain: C
Synonym: Rna Polymerases I And III Subunit Ac1,C37,Dna-Dire Polymerases I And III 40 Kda Polypeptide,C40;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc9
Chain: D
Synonym: Rna Polymerase III Subunit C9,Rna Polymerase III S C17;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: E
Synonym: Rna Polymerases I,II,And III Subunit Abc1,Abc27,Dn Rna Polymerases I,And III 27 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: F
Synonym: Rna Polymerases I,II,And III Subunit Abc2,Abc23,Dn Rna Polymerases I,And III 23 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc8
Chain: G
Synonym: Rna Polymerase III Subunit C8,Dna-Directed Rna Pol III 25 Kda Polypeptide,Rna Polymerase III Subunit C25;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: H
Synonym: Rna Polymerases I,II,And III Subunit Abc3,Abc14.4, Dna-Directed Rna Polymerases I,And III 14.5 Kda Polypeptide

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc10
Chain: I
Synonym: Rna Polymerase III Subunit C10,Dna-Directed Rna Po III 12.5 Kda Polypeptide,Rna Polymerase III Subunit C11;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: J
Synonym: Rna Polymerases I,II,And III Subunit Abc5,Abc10-Be Dna-Directed Rna Polymerases I,And III 8.3 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I And III Subunit Rp
Chain: K
Synonym: Rna Polymerases I And III Subunit Ac2,Ac19,Dna-Dir Polymerases I And III 16 Kda Polypeptide,Rpa19;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: L
Synonym: Rna Polymerases I,II,And III Subunit Abc4,Abc10-Al

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc5
Chain: M
Synonym: Rna Polymerase III Subunit C5,Dna-Directed Rna Pol III 37 Kda Polypeptide,Rna Polymerase III Subunit C37;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc4
Chain: N
Synonym: Rna Polymerase III Subunit C4,C53,Dna-Directed Rna Polymerase III 47 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc3
Chain: O
Synonym: Rna Polymerase III Subunit C3,C82,Dna-Directed III Polypeptide,C74;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc6
Chain: P
Synonym: Rna Polymerase III Subunit C6,C34,Dna-Directed Rna Polymerase III 36 Kda Polypeptide;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Dna-Directed Rna Polymerase III Subunit Rpc7
Chain: Q
Synonym: Rna Polymerase III Subunit C7,Dna-Directed Rna Pol III 31 Kda Polypeptide,C31;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Tata-Box-Binding Protein
Chain: U
Synonym: Tata Sequence-Binding Protein,Tbp,Tata-Binding Fac Box Factor,Transcription Factor D,Transcription Initiation Tfiid Tbp Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Spt15, Btf1, Tbp1, Yer148w
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Iiib 70 Kda Subunit
Chain: V
Synonym: Tfiiib,B-Related Factor 1,Brf-1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Brf1, Pcf4, Tds4, Ygr246c
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Tfiiib Component B''
Chain: W
Synonym: Tfiiib90
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Bdp1, Tfc5, Ynl039w, N2682
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Non-Template Dna
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 559292

Molecule: Template Dna
Chain: Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 559292
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
ligand ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E
  • RNA-directed 5'-3' RNA polym...


  • F
  • RNA-directed 5'-3' RNA polym...


  • G


    H
  • RNA-directed 5'-3' RNA polym...


  • I


    J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
  • K


    L
  • RNA-directed 5'-3' RNA polym...


  • M


    N


    O


    P


    Q


    U


    V
  • RNA polymerase III core bind...
  • TFIIIC-class transcription f...
  • DNA-templated transcriptiona...
  • transcription factor TFIIIB ...
  • W
  • TFIIIC-class transcription f...
  • DNA-templated transcriptiona...
  • transcription factor TFIIIB ...
  • Primary referenceMolecular mechanism of promoter opening by RNA polymerase III., Vorlander MK, Khatter H, Wetzel R, Hagen WJH, Muller CW, Nature. 2018 Jan 17;553(7688):295-300. doi: 10.1038/nature25440. PMID:29345638
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (840 Kb) [Save to disk]
  • Biological Unit Coordinates (6f44.pdb1.gz) 822 Kb
  • LPC: Ligand-Protein Contacts for 6F44
  • CSU: Contacts of Structural Units for 6F44
  • Retrieve 6F44 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F44 from S2C, [Save to disk]
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  • Visual 3D analysis of 6F44
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f44_I] [6f44_L] [6f44_U] [6f44_E] [6f44_K] [6f44_D] [6f44_P] [6f44_C] [6f44_Y] [6f44_F] [6f44_M] [6f44_V] [6f44_X] [6f44_W] [6f44_Q] [6f44_J] [6f44_O] [6f44_B] [6f44_N] [6f44_G] [6f44_A] [6f44_H]
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  • Domain organization of by SWISSPFAM
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  • Community annotation for 6F44 at PDBWiki (http://pdbwiki.org)

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