6F58 Transcription date Dec 01, 2017
title Crystal Structure Of Human Brachyury (T) In Complex With Dna
authors J.A.Newman, A.E.Gavard, T.Krojer, L.Shrestha, N.A.Burgess-Brown, Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi
compound source
Molecule: Dna (5'- D(Apaptptptpcpapcpapcpcptpapgpgptpgptpgp Tpt)-3');
Chain: C, D
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Brachyury Protein
Chain: A, B
Synonym: Protein T
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.978 37.109 110.796 90.00 103.99 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (6f58.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 6F58
  • CSU: Contacts of Structural Units for 6F58
  • Structure Factors (1114 Kb)
  • Retrieve 6F58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F58 from S2C, [Save to disk]
    • View 6F58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F58
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f58_B] [6f58_D] [6f58_A] [6f58_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F58
  • Community annotation for 6F58 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science