6F7O Signaling Protein date Dec 11, 2017
title Nmr Structure Of An Odin-Sam1 Stapled Peptide
authors M.Leone, F.A.Mercurio
compound source
Molecule: Ankyrin Repeat And Sam Domain-Containing Protein
Chain: A
Synonym: Odin
Engineered: Yes
Other_details: Fragment 745-757 Of Anks1a Protein (Uniprot Q92625) With R749 And L753 Mutated In Mk8 (=(S)-2-(4'-Pente Alanine )
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand ACE, MK8, NH2 enzyme
Primary referenceSam domain-based stapled peptides: Structural analysis and interaction studies with the Sam domains from the EphA2 receptor and the lipid phosphatase Ship2., Mercurio FA, Pirone L, Di Natale C, Marasco D, Pedone EM, Leone M, Bioorg Chem. 2018 Jul 20;80:602-610. doi: 10.1016/j.bioorg.2018.07.013. PMID:30036816
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (6f7o.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 6F7O
  • CSU: Contacts of Structural Units for 6F7O
  • Original NMR restraints for 6F7O from PDB
  • Retrieve 6F7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F7O from S2C, [Save to disk]
    • View 6F7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F7O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f7o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F7O
  • Community annotation for 6F7O at PDBWiki (http://pdbwiki.org)

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