6F9N Rna Binding Protein date Dec 14, 2017
title Crystal Structure Of The Human Cpsf160-Wdr33 Complex
authors M.Clerici, M.Jinek
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: A
Synonym: Cleavage And Polyadenylation Specificity Factor 16 Subunit,Cpsf 160 Kda Subunit;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cpsf1, Cpsf160
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_taxid: 1491790
Expression_system_plasmid: Pml-5b (Addgene #30122)

Molecule: Pre-Mrna 3' End Processing Protein Wdr33
Chain: B
Synonym: Wd Repeat-Containing Protein 33,Wd Repeat-Containi Wdc146;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wdr33, Wdc146
Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014
Expression_system_taxid: 1491790
symmetry Space Group: P 1
R_factor 0.228 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.910 77.400 104.020 87.56 76.41 67.00
method X-Ray Diffractionresolution 2.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A

  • mRNA cleavage and polyadenyl...
    • Primary referenceStructural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex., Clerici M, Faini M, Aebersold R, Jinek M, Elife. 2017 Dec 23;6. doi: 10.7554/eLife.33111. PMID:29274231
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (520 Kb) [Save to disk]
  • Biological Unit Coordinates (6f9n.pdb1.gz) 511 Kb
  • CSU: Contacts of Structural Units for 6F9N
  • Structure Factors (909 Kb)
  • Retrieve 6F9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F9N from S2C, [Save to disk]
    • View 6F9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F9N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f9n_B] [6f9n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F9N
  • Community annotation for 6F9N at PDBWiki (http://pdbwiki.org)

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