6F9W Rna date Dec 15, 2017
title Crystal Structure Of The Lsm Domain Of Lsm14 In Complex With Terminal Peptide Of 4e-T
authors T.Brandmann, M.Jinek
compound source
Molecule: Protein Lsm14 Homolog A
Chain: A
Synonym: Protein Fam61a,Protein Scd6 Homolog,Putative Alpha Synuclein-Binding Protein,Alphasnbp,Rna-Associated Protein Hrap55a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lsm14a, C19orf13, Fam61a, Rap55, Rap55a
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pml-2mt (Addgene #29708)

Molecule: Eukaryotic Translation Initiation Factor 4e Trans
Chain: B
Synonym: Eif4e Transporter,Eukaryotic Translation Initiatio 4e Nuclear Import Factor 1;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif4enif1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 4 21 2
R_factor 0.221 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.890 64.890 61.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand MSE enzyme
Primary referenceMolecular architecture of LSM14 interactions involved in the assembly of mRNA silencing complexes., Brandmann T, Fakim H, Padamsi Z, Youn JY, Gingras AC, Fabian MR, Jinek M, EMBO J. 2018 Mar 6. pii: embj.201797869. doi: 10.15252/embj.201797869. PMID:29510985
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (6f9w.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 6F9W
  • CSU: Contacts of Structural Units for 6F9W
  • Structure Factors (84 Kb)
  • Retrieve 6F9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F9W from S2C, [Save to disk]
  • View 6F9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6F9W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f9w_B] [6f9w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6F9W
  • Community annotation for 6F9W at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science