6FAI Ribosome date Dec 15, 2017
title Structure Of A Eukaryotic Cytoplasmic Pre-40s Ribosomal Subu
authors A.Scaiola, C.Pena, M.Weisser, D.Boehringer, M.Leibundgut, P.Kling Nerurkar, S.Gerhardy, V.G.Panse, N.Ban
compound source
Molecule: 40s Ribosomal Protein S27-A
Chain: b
Synonym: Rp61,Small Ribosomal Subunit Protein Es27-A,Ys20
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S28-A
Chain: c
Synonym: S33,Small Ribosomal Subunit Protein Es28-A,Ys27

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S29-A
Chain: d
Synonym: S36,Small Ribosomal Subunit Protein Us14-A,Ys29

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S30-A
Chain: e
Synonym: Small Ribosomal Subunit Protein Es30-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Guanine Nucleotide-Binding Protein Subunit Beta-L Protein;
Chain: g
Synonym: Receptor For Activated C Kinase,Receptor Of Activa Protein Kinase C 1,Rack1,Small Ribosomal Subunit Protein Ra

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Pre-Rrna-Processing Protein Pno1
Chain: h
Synonym: Partner Of Nob1,Ribosomal Rna-Processing Protein 2

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Essential Nuclear Protein 1
Chain: I

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Protein Ltv1
Chain: j
Synonym: Low-Temperature Viability Protein 1

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Ribosome Biogenesis Protein Tsr1
Chain: k
Synonym: 20s Rrna Accumulation Protein 1

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Serinethreonine-Protein Kinase Rio2
Chain: l
Ec: 2.7.11.1

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 20s Ribosomal Rna
Chain: 2

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S0-A
Chain: A
Synonym: Nucleic Acid-Binding Protein Nab1a,Small Ribosomal Protein Us2-A;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S1-A
Chain: B
Synonym: Rp10a,Small Ribosomal Subunit Protein Es1-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S2
Chain: C
Synonym: Omnipotent Suppressor Protein Sup44,Rp12,S4,Small Subunit Protein Us5,Ys5;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S3
Chain: D
Synonym: Rp13,Small Ribosomal Subunit Protein Us3,Ys3

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S4-A
Chain: E
Synonym: Rp5,S7,Small Ribosomal Subunit Protein Es4-A,Ys6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S5
Chain: F
Synonym: Rp14,S2,Small Ribosomal Subunit Protein Us7,Ys8

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S6-A
Chain: G
Synonym: Rp9,S10,Small Ribosomal Subunit Protein Es6-A,Ys4

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S7-A
Chain: H
Synonym: Rp30,Rp40,Small Ribosomal Subunit Protein Es7-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S8-A
Chain: I
Synonym: Rp19,S14,Small Ribosomal Subunit Protein Es8-A,Ys9

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S9-A
Chain: J
Synonym: Rp21,S13,Small Ribosomal Subunit Protein Us4-A,Yp2

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S11-A
Chain: L
Synonym: Rp41,S18,Small Ribosomal Subunit Protein Us17-A,Ys

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S12
Chain: M
Synonym: Small Ribosomal Subunit Protein Es12

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S13
Chain: N
Synonym: S27a,Small Ribosomal Subunit Protein Us15,Ys15

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S14-A
Chain: O
Synonym: Rp59a,Small Ribosomal Subunit Protein Us11-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S15
Chain: P
Synonym: Rig Protein,Rp52,S21,Small Ribosomal Subunit Prote Ys21;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S16-A
Chain: Q
Synonym: Rp61r,Small Ribosomal Subunit Protein Us9-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S17-A
Chain: R
Synonym: Rp51a,Small Ribosomal Subunit Protein Es17-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S18-A
Chain: S
Synonym: Small Ribosomal Subunit Protein Us13-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S19-A
Chain: T
Synonym: Rp55a,S16a,Small Ribosomal Subunit Protein Es19-A, Ys16a;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S20
Chain: U
Synonym: Small Ribosomal Subunit Protein Us10

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S21-A
Chain: V
Synonym: S26,Small Ribosomal Subunit Protein Es21-A,Ys25

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S22-A
Chain: W
Synonym: Rp50,S24,Small Ribosomal Subunit Protein Us8-A,Yp5

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S23-A
Chain: X
Synonym: Rp37,S28,Small Ribosomal Subunit Protein Us12-A,Ys

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S24-A
Chain: Y
Synonym: Rp50,Small Ribosomal Subunit Protein Es24-A

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: 40s Ribosomal Protein S25-A
Chain: Z
Synonym: Rp45,S31,Small Ribosomal Subunit Protein Es25-A,Ys

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.40 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D

  • cytosolic small ribosomal su...
  • E

  • cytosolic small ribosomal su...
  • F

  • cytosolic small ribosomal su...
  • G

  • cytosolic small ribosomal su...
  • H


    I

  • cytosolic small ribosomal su...
  • J

  • cytosolic small ribosomal su...
  • L

  • cytosolic small ribosomal su...
  • M

  • cytosolic small ribosomal su...
  • N

  • cytosolic small ribosomal su...
  • O


    P


    Q


    R


    S


    T

  • cytosolic small ribosomal su...
  • U

  • cytosolic small ribosomal su...
  • V

  • cytosolic small ribosomal su...
  • W

  • cytosolic small ribosomal su...
  • X


    Y


    Z

  • cytosolic small ribosomal su...
  • b

  • cytosolic small ribosomal su...
  • c

  • cytosolic small ribosomal su...
  • d

  • cytosolic small ribosomal su...
  • e


    g
  • GDP-dissociation inhibitor a...


  • h


    i


    j


    k


    l


    Primary referenceStructure of a eukaryotic cytoplasmic pre-40S ribosomal subunit., Scaiola A, Pena C, Weisser M, Bohringer D, Leibundgut M, Klingauf-Nerurkar P, Gerhardy S, Panse VG, Ban N, EMBO J. 2018 Feb 19. pii: embj.201798499. doi: 10.15252/embj.201798499. PMID:29459436
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1717 Kb) [Save to disk]
  • Biological Unit Coordinates (6fai.pdb1.gz) 1700 Kb
  • CSU: Contacts of Structural Units for 6FAI
  • Retrieve 6FAI in mmCIF format [Save to disk]
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  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fai from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fai_P] [6fai_N] [6fai_R] [6fai_H] [6fai_g] [6fai_d] [6fai_Y] [6fai_D] [6fai_B] [6fai_L] [6fai_C] [6fai_l] [6fai_X] [6fai_Q] [6fai_c] [6fai_E] [6fai_M] [6fai_A] [6fai_j] [6fai_O] [6fai_I] [6fai_V] [6fai_i] [6fai_S] [6fai_G] [6fai_b] [6fai_F] [6fai_J] [6fai_W] [6fai_Z] [6fai_2] [6fai_h] [6fai_U] [6fai_k] [6fai_T] [6fai_e]
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