6FB3 Cell Adhesion date Dec 18, 2017
title Teneurin 2 Partial Extracellular Domain
authors V.A.Jackson, M.Carrasquero, E.D.Lowe, E.Seiradake
compound source
Molecule: Teneurin-2
Chain: A, B, C, D
Synonym: Ten-2,Neurestin,Protein Odd Ozten-M Homolog 2,Ten Ten-M2,Teneurin Transmembrane Protein 2;
Engineered: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Tenm2, Odz2, Tnm2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: Hek293t
Expression_system_plasmid: Phlsec
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.560 452.560 146.360 90.00 95.12 90.00
method X-Ray Diffractionresolution 2.38 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of Teneurin adhesion receptors reveal an ancient fold for cell-cell interaction., Jackson VA, Meijer DH, Carrasquero M, van Bezouwen LS, Lowe ED, Kleanthous C, Janssen BJC, Seiradake E, Nat Commun. 2018 Mar 14;9(1):1079. doi: 10.1038/s41467-018-03460-0. PMID:29540701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2525 Kb) [Save to disk]
  • Biological Unit Coordinates (6fb3.pdb1.gz) 650 Kb
  • Biological Unit Coordinates (6fb3.pdb2.gz) 645 Kb
  • Biological Unit Coordinates (6fb3.pdb3.gz) 630 Kb
  • Biological Unit Coordinates (6fb3.pdb4.gz) 644 Kb
  • CSU: Contacts of Structural Units for 6FB3
  • Structure Factors (15378 Kb)
  • Retrieve 6FB3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FB3 from S2C, [Save to disk]
  • View 6FB3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FB3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6fb3, region B:320-679 [Jmol] [rasmolscript] [script source]
  • Fold representative 6fb3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fb3_C] [6fb3_A] [6fb3_D] [6fb3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FB3
  • Community annotation for 6FB3 at PDBWiki (http://pdbwiki.org)

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