6FBB Peptide Binding Protein date Dec 18, 2017
title Crystal Structure Of 14-3-3 Sigma In Complex With Wild-Type
authors S.Leysen, F.A.Meijer, L.G.Milroy, C.Ottmann
compound source
Molecule: 14-3-3 Protein Sigma
Chain: A
Synonym: Epithelial Cell Marker Protein 1,Stratifin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfn, Hme1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Nico21

Molecule: Shroom3
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.154 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.528 112.241 62.725 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CL, MG, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Primary referenceCharacterization of Coding/Noncoding Variants for SHROOM3 in Patients with CKD., Prokop JW, Yeo NC, Ottmann C, Chhetri SB, Florus KL, Ross EJ, Sosonkina N, Link BA, Freedman BI, Coppola CJ, McDermott-Roe C, Leysen S, Milroy LG, Meijer FA, Geurts AM, Rauscher FJ 3rd, Ramaker R, Flister MJ, Jacob HJ, Mendenhall EM, Lazar J, J Am Soc Nephrol. 2018 Feb 23. pii: ASN.2017080856. doi: 10.1681/ASN.2017080856. PMID:29476007
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (6fbb.pdb1.gz) 254 Kb
  • LPC: Ligand-Protein Contacts for 6FBB
  • CSU: Contacts of Structural Units for 6FBB
  • Structure Factors (1884 Kb)
  • Retrieve 6FBB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FBB from S2C, [Save to disk]
  • View 6FBB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FBB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fbb_P] [6fbb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FBB
  • Community annotation for 6FBB at PDBWiki (http://pdbwiki.org)

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