6FBF Dna Binding Protein date Dec 19, 2017
title Klentaq Dna Polymerase Processing A Modified Primer - Bearin Modification Upstream At The Fourth Primer Nucleotide.
authors H.M.Kropp, K.Diederichs, A.Marx
compound source
Molecule: Dna Polymerase I, Thermostable
Chain: A
Synonym: Taq Polymerase 1
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Gene: Pola, Pol1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpapcpcpapgpcpap(Oh3)Pcpgpc
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Apapapcpgpcpgpgptpgpcptpgp 3');
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.200 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.310 109.310 91.123 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand D4B, MN, XG4 enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSnapshots of a modified nucleotide moving through the confines of a DNA polymerase., Kropp HM, Durr SL, Peter C, Diederichs K, Marx A, Proc Natl Acad Sci U S A. 2018 Sep 17. pii: 1811518115. doi:, 10.1073/pnas.1811518115. PMID:30224478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (6fbf.pdb1.gz) 291 Kb
  • LPC: Ligand-Protein Contacts for 6FBF
  • CSU: Contacts of Structural Units for 6FBF
  • Structure Factors (1163 Kb)
  • Retrieve 6FBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FBF from S2C, [Save to disk]
    • View 6FBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6FBF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fbf_B] [6fbf_A] [6fbf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6FBF
  • Community annotation for 6FBF at PDBWiki (http://pdbwiki.org)

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