6FD3 Transferase date Dec 21, 2017
title Thiophosphorylated Pak3 Kinase Domain
authors F.J.Sorrell, D.Wang, F.Von Delft, C.Bountra, A.M.Edwards, J.M.Elk
compound source
Molecule: Serinethreonine-Protein Kinase Pak 3
Chain: A
Synonym: Beta-Pak,Oligophrenin-3,P21-Activated Kinase 3,Pak
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pak3, Ophn3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41
R_factor 0.175 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.825 108.825 57.934 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.52 Å
ligand ADP, EDO, MG, T8L enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (6fd3.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 6FD3
  • CSU: Contacts of Structural Units for 6FD3
  • Structure Factors (2171 Kb)
  • Retrieve 6FD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FD3 from S2C, [Save to disk]
    • View 6FD3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6FD3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6fd3, region D:320-679 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fd3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6FD3
  • Community annotation for 6FD3 at PDBWiki (http://pdbwiki.org)

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