6FF4 | Splicing | date | Jan 03, 2018 |
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title | Human Bact Spliceosome Core Structure | ||||||||||||||
authors | D.Haselbach, I.Komarov, D.Agafonov, K.Hartmuth, B.Graf, B.Kastner R.Luehrmann, H.Stark | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Rna-Binding Motif Protein, X-Linked 2 Chain: 1 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: U2 Snrna Chain: 2 |
Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Bud13 Homolog Chain: 3 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: U5 Snrna Chain: 5 |
Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: U6 Snrna Chain: 6 |
Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Splicing Factor 3a Subunit 2 Chain: 7 Synonym: Sf3a66,Spliceosome-Associated Protein 62,Sap 62 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 2 Chain: 8 Synonym: Pre-Mrna-Splicing Factor Sf3b 145 Kda Subunit,Sf3b Spliceosome-Associated Protein 145,Sap 145; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Pre-Mrna-Processing-Splicing Factor 8 Chain: A Synonym: 220 Kda U5 Snrnp-Specific Protein,Prp8 Homolog,Spl Factor Prp8,P220; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: 116 Kda U5 Small Nuclear Ribonucleoprotein Compon Chain: B Synonym: Elongation Factor Tu Gtp-Binding Domain-Containing 2,Snu114 Homolog,Hsnu114,U5 Snrnp-Specific Protein,116 Kda, Kda; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Snw Domain-Containing Protein 1 Chain: C Synonym: Nuclear Protein Skip,Nuclear Receptor Coactivator Ski-Interacting Protein; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Pleiotropic Regulator 1 Chain: D |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Pre-Mrna-Processing Factor 17 Chain: E Synonym: Cell Division Cycle 40 Homolog,Eh-Binding Protein Prp17 Homolog,Hprp17; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Cell Division Cycle 5-Like Protein Chain: L Synonym: Cdc5-Like Protein,Pombe Cdc5-Related Protein |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Crooked Neck-Like Protein 1 Chain: O Synonym: Crooked Neck Homolog,Hcrn |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Pre-Mrna-Splicing Factor Rbm22 Chain: P Synonym: Rna-Binding Motif Protein 22,Zinc Finger Ccch Doma Containing Protein 16; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Protein Bud31 Homolog Chain: Q Synonym: Protein Edg-2,Protein G10 Homolog |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Spliceosome-Associated Protein Cwc15 Homolog Chain: R |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Serinearginine Repetitive Matrix Protein 2 Chain: S Synonym: 300 Kda Nuclear Matrix Antigen,Serinearginine-Ric Factor-Related Nuclear Matrix Protein Of 300 Kda,Serarg-Re Nuclear Matrix Protein Of 300 Kda,Splicing Coactivator Subu Srm300,Tax-Responsive Enhancer Element-Binding Protein 803, |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase-Like 1 Chain: V Synonym: Ppiase,Rotamase Ppil1 Ec: 5.2.1.8 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Serinearginine Repetitive Matrix Protein 1 Chain: Y Synonym: Sr-Related Nuclear Matrix Protein Of 160 Kda,Srm16 Related Nuclear Matrix Protein; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Pre Mrna Chain: Z |
Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Cwc27 Homolog Chain: s Synonym: Ppiase Cwc27,Antigen Ny-Co-10,Serologically Define Cancer Antigen 10; Ec: 5.2.1.8 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Ring Finger Protein 113a Chain: t Synonym: Zinc Finger Protein 183 |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 1 Chain: u Synonym: Pre-Mrna-Splicing Factor Sf3b 155 Kda Subunit,Sf3b Spliceosome-Associated Protein 155,Sap 155; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 3 Chain: v Synonym: Pre-Mrna-Splicing Factor Sf3b 130 Kda Subunit,Sf3b Staf130,Spliceosome-Associated Protein 130,Sap 130; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 5 Chain: x Synonym: Sf3b5,Pre-Mrna-Splicing Factor Sf3b 10 Kda Subunit |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Phd Finger-Like Domain-Containing Protein 5a Chain: y Synonym: Phd Finger-Like Domain Protein 5a,Splicing Factor Associated 14 Kda Protein,Sf3b14b; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
Molecule: Splicing Factor 3b Subunit 6 Chain: z Synonym: Pre-Mrna Branch Site Protein P14,Sf3b 14 Kda Subun Sf3b14a,Spliceosome-Associated Protein,14-Kda,Splicing Fact Subunit 6,14kda |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hela S3 | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 3.40 Å | ||||||||||||
ligand | GTP, IHP, MG, ZN | enzyme | Isomerase E.C.5.2.1.8 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex., Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H, Cell. 2018 Jan 25;172(3):454-464.e11. doi: 10.1016/j.cell.2018.01.010. Epub 2018 , Jan 17. PMID:29361316 |
Data retrieval |
View 6FF4 in 3D |
Visual 3D analysis of 6FF4 |
Structure-derived information |
- Domain d1n6ff4, region F:680-762,F:854-1061 [Jmol] [rasmolscript] [script source] |
Sequence-derived information |
Other resources with information on 6FF4 |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |