6FGA	Ligase	date	Jan 10, 2018
title	Crystal Structure Of Trim21 E3 Ligase, Ring Domain In Comple Cognate E2 Conjugating Enzyme Ube2e1
authors	M.Anandapadamanaban, M.Moche, M.Sunnerhagen
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Trim21 Chain: A, B, C, D, E, F, G, H Synonym: 52 Kda Ro Protein,52 Kda Ribonucleoprotein Autoant Ross-A,Ring Finger Protein 81,Ring-Type E3 Ubiquitin Trans Trim21,Ro(Ss-A),Sjoegren Syndrome Type A Antigen,Ss-A,Tripa Motif-Containing Protein 21; Ec: 2.3.2.27 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Trim21, Rnf81, Ro52, Ssa1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Ros-2
Molecule: Ubiquitin-Conjugating Enzyme E2 E1 Chain: I, J, K, L, M, N, O Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme E Ubiquitin-Conjugating Enzyme E1,Ubch6,Ubiquitin Carrier Pro Ubiquitin-Protein Ligase E1; Ec: 2.3.2.23,2.3.2.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2e1, Ubch6 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_variant: Ros-2
symmetry	Space Group: C 1 2 1	R_factor 0.253 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.835 95.871 235.097 90.00 93.15 90.00
method	X-Ray Diffraction	resolution	2.82 Å
ligand	GOL, ZN	enzyme	Transferase E.C.2.3.2.27 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	E3 ubiquitin-protein ligase TRIM21-mediated lysine capture by UBE2E1 reveals substrate-targeting mode of a ubiquitin-conjugating E2., Anandapadamanaban M, Kyriakidis NC, Csizmok V, Wallenhammar A, Espinosa AC, Ahlner A, Round AR, Trewhella J, Moche M, Wahren-Herlenius M, Sunnerhagen M, J Biol Chem. 2019 Jun 3. pii: RA119.008485. doi: 10.1074/jbc.RA119.008485. PMID:31160341

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (6fga.pdb1.gz) 78 Kb Biological Unit Coordinates (6fga.pdb2.gz) 77 Kb Biological Unit Coordinates (6fga.pdb3.gz) 77 Kb Biological Unit Coordinates (6fga.pdb4.gz) 54 Kb LPC: Ligand-Protein Contacts for 6FGA CSU: Contacts of Structural Units for 6FGA Structure Factors (1091 Kb) Retrieve 6FGA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6FGA from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fga_J] [6fga_O] [6fga_L] [6fga_B] [6fga_K] [6fga_F] [6fga_D] [6fga_A] [6fga_E] [6fga_N] [6fga_C] [6fga_I] [6fga_G] [6fga_M] [6fga_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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