6FGB Immune System date Jan 10, 2018
title Human Fcrn Extra-Cellular Domain Complexed With Fab Fragment Rozanolixizumab
authors K.Sarkar, T.Ceska, C.Meier
compound source
Molecule: Igg Receptor Fcrn Large Subunit P51
Chain: A
Synonym: Fcrn,Igg Fc Fragment Receptor Transporter Alpha Ch Neonatal Fc Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fcgrt, Fcrn
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: 1519.G57- Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 1519.G57- Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.232 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.100 150.100 89.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand CL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cellular response to iron io...

  • Primary referenceGeneration and characterization of a high affinity anti-human FcRn antibody, rozanolixizumab, and the effects of different molecular formats on the reduction of plasma IgG concentration., Smith B, Kiessling A, Lledo-Garcia R, Dixon KL, Catley MC, Atherfold P, D'Hooghe LE, Finney H, Greenslade K, Hailu H, Kevorkian L, Lightwood D, Meier C, Munro R, Qureshi O, Sarkar K, Shaw SP, Tewari R, Turner A, Tyson K, West S, Shaw S, Brennan FR, MAbs. 2018 Aug 21. doi: 10.1080/19420862.2018.1505464. PMID:30130439
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (6fgb.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 6FGB
  • CSU: Contacts of Structural Units for 6FGB
  • Structure Factors (763 Kb)
  • Retrieve 6FGB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FGB from S2C, [Save to disk]
  • View 6FGB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FGB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fgb_B] [6fgb_A] [6fgb_L] [6fgb_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FGB
  • Community annotation for 6FGB at PDBWiki (http://pdbwiki.org)

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