6FGP	Protein Binding	date	Jan 11, 2018
title	Nmr Solution Structure Of Monomeric Ccl5 In Complex With A D Sulfated N-Terminal Segment Of Ccr5
authors	J.Anglister, M.Abayev
compound		source
Molecule: C-C Chemokine Receptor Type 5 Chain: A Synonym: Ccr5,Chemr13,Hiv-1 Fusion Coreceptor Engineered: Yes Other_details: N-Terminal Segment Of Ccr5, Doubly-Sulfated Position Y10 And Y14 That Were Synthesized By Solid-Phase P Synthesis;		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: C-C Motif Chemokine 5 Chain: B Synonym: Eocp,Eosinophil Chemotactic Cytokine,Sis-Delta,Sma Inducible Cytokine A5,T Cell-Specific Protein P228,Tcp228,T Specific Protein Rantes; Engineered: Yes Mutation: Yes Other_details: Chemokine Protein (Consist P9s And E66s Muta		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccl5, D17s136e, Scya5 Expression_system: Escherichia Coli Expression_system_taxid: 562
method	Solution NMR
ligand	TYS	enzyme
Gene Ontology	Chain Function Process Component B receptor signaling protein t... CCR1 chemokine receptor bind... chemoattractant activity chemokine receptor antagonis...
Primary reference	The solution structure of monomeric CCL5 in complex with a doubly-sulfated N-terminal segment of CCR5., Abayev M, Rodrigues JP, Srivastava G, Arshava B, Jaremko L, Jaremko M, Naider F, Levitt M, Anglister J, FEBS J. 2018 Apr 4. doi: 10.1111/febs.14460. PMID:29619777

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk] Biological Unit Coordinates (6fgp.pdb1.gz) 26 Kb LPC: Ligand-Protein Contacts for 6FGP CSU: Contacts of Structural Units for 6FGP Original NMR restraints for 6FGP from PDB Retrieve 6FGP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6FGP from S2C, [Save to disk]

View 6FGP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6FGP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fgp_A] [6fgp_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6FGP

Community annotation for 6FGP at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---