6FNE	Hydrolase	date	Feb 03, 2018
title	Structure Of Human Brag2 (Sec7-Ph Domains) With The Inhibito Bound To The Ph Domain
authors	A.Nawrotek, M.Zeghouf, J.Cherfils
compound		source
Molecule: Iq Motif And Sec7 Domain-Containing Protein 1 Chain: A, B Synonym: Adp-Ribosylation Factors Guanine Nucleotide-Exchan 100,Adp-Ribosylation Factors Guanine Nucleotide-Exchange Pr Brefeldin-Resistant Arf-Gef 2 Protein,Brag2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Iqsec1, Arfgep100, Brag2, Kiaa0763 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.912 66.161 218.823 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	2PE, DY5	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	PH-domain-binding inhibitors of nucleotide exchange factor BRAG2 disrupt Arf GTPase signaling., Nawrotek A, Benabdi S, Niyomchon S, Kryszke MH, Ginestier C, Caneque T, Tepshi L, Mariani A, St Onge RP, Giaever G, Nislow C, Charafe-Jauffret E, Rodriguez R, Zeghouf M, Cherfils J, Nat Chem Biol. 2019 Feb 11. pii: 10.1038/s41589-019-0228-3. doi:, 10.1038/s41589-019-0228-3. PMID:30742123

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (6fne.pdb1.gz) 60 Kb Biological Unit Coordinates (6fne.pdb2.gz) 56 Kb LPC: Ligand-Protein Contacts for 6FNE CSU: Contacts of Structural Units for 6FNE Structure Factors (739 Kb) Retrieve 6FNE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6FNE from S2C, [Save to disk]

View 6FNE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6FNE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fne_A] [6fne_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6FNE

Community annotation for 6FNE at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---