6FP4 Flavoprotein date Feb 09, 2018
title Thioredoxin Glutathione Reductase From Schistosoma Mansoni I With 1,8-Naphthyridine-2-Carboxylic Acid
authors I.Silvestri, F.Fata, A.E.Miele, G.Boumis, D.L.Williams, F.Angeluc
compound source
Molecule: Thioredoxin Glutathione Reductase
Chain: A
Ec: 1.8.1.9
Engineered: Yes
Organism_scientific: Schistosoma Mansoni
Organism_common: Blood Fluke
Organism_taxid: 6183
Gene: Smp_048430
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.316 101.584 58.783 90.00 112.78 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Oxidoreductase E.C.1.8.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • thioredoxin-disulfide reduct...
  • electron transfer activity


  • Primary referenceFragment-Based Discovery of a Regulatory Site in Thioredoxin Glutathione Reductase Acting as "Doorstop" for NADPH Entry., Silvestri I, Lyu H, Fata F, Boumis G, Miele AE, Ardini M, Ippoliti R, Bellelli A, Jadhav A, Lea WA, Simeonov A, Chen Q, Arner ESJ, Thatcher GR, Petukhov PA, Williams DL, Angelucci F, ACS Chem Biol. 2018 May 25. doi: 10.1021/acschembio.8b00349. PMID:29800515
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (6fp4.pdb1.gz) 567 Kb
  • CSU: Contacts of Structural Units for 6FP4
  • Structure Factors (1190 Kb)
  • Retrieve 6FP4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FP4 from S2C, [Save to disk]
  • View 6FP4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FP4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fp4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fp4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FP4
  • Community annotation for 6FP4 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science