OCA Atlas for 6FQV

6FQV

Isomerase

date

Feb 14, 2018

title

2.60a Binary Complex Of S.Aureus Gyrase With Uncleaved Dna

authors

B.D.Bax, T.Germe, E.Basque, A.Maxwell

compound

source

Molecule: Dna Gyrase Subunit A
Chain: A, C, R, T
Ec: 5.99.1.3
Engineered: Yes

Organism_scientific: Staphylococcus Aureus (Strain N315)
Organism_taxid: 158879
Gene: Gyra, Sa0006
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Gyrase Subunit B,Dna Gyrase Subunit B
Chain: B, D, S, U
Ec: 5.99.1.3,5.99.1.3
Engineered: Yes

Organism_scientific: Staphylococcus Aureus (Strain N315)
Organism_taxid: 158879
Gene: Gyrb, Sa0005
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Gpapgpcpgptpapcpgpgpcpcpgptpapcpgpcptp
Chain: E, F, V, W
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

symmetry

Space Group: P 1 21 1

R_factor

0.200

R_Free

0.236

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
93.280	124.640	155.240	90.00	95.65	90.00

method

X-Ray Diffraction

resolution

2.60 Å

ligand

GOL, NA, SO4

enzyme

Isomerase E.C.5.99.1.3 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A, T, C, R
S, D, B, U

Primary reference

A new class of antibacterials, the imidazopyrazinones, reveal structural transitions involved in DNA gyrase poisoning and mechanisms of resistance., Germe T, Voros J, Jeannot F, Taillier T, Stavenger RA, Bacque E, Maxwell A, Bax BD, Nucleic Acids Res. 2018 Mar 10. pii: 4925761. doi: 10.1093/nar/gky181. PMID:29538767

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (931 Kb) [Save to disk]

Biological Unit Coordinates (6fqv.pdb1.gz) 460 Kb

Biological Unit Coordinates (6fqv.pdb2.gz) 466 Kb

LPC: Ligand-Protein Contacts for 6FQV

CSU: Contacts of Structural Units for 6FQV

Structure Factors (2095 Kb)

Retrieve 6FQV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6FQV from S2C, [Save to disk]

View 6FQV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6FQV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6fqv_A] [6fqv_E] [6fqv_T] [6fqv_W] [6fqv_C] [6fqv_U] [6fqv_V] [6fqv_S] [6fqv_F] [6fqv_R] [6fqv_B] [6fqv_D]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 6FQV

Community annotation for 6FQV at PDBWiki (http://pdbwiki.org)

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