6FUK Oxidoreductase date Feb 27, 2018
title Crystal Structure Of Utx Complexed With 5-Carboxy-8-Hydroxyq
authors C.Esposito, P.Sledz, A.Caflisch
compound source
Molecule: Lysine-Specific Demethylase 6a
Chain: A
Synonym: Histone Demethylase Utx,Ubiquitously-Transcribed T On The X Chromosome,Ubiquitously-Transcribed X Chromosome Tetratricopeptide Repeat Protein;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kdm6a, Utx
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
80.417 83.261 92.898 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
enzyme Oxidoreductase E.C.1.14.11 BRENDA
Primary referenceIn Silico Identification of JMJD3 Demethylase Inhibitors., Esposito C, Wiedmer L, Caflisch A, J Chem Inf Model. 2018 Oct 3. doi: 10.1021/acs.jcim.8b00539. PMID:30226987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (6fuk.pdb1.gz) 85 Kb
  • CSU: Contacts of Structural Units for 6FUK
  • Structure Factors (778 Kb)
  • Retrieve 6FUK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FUK from S2C, [Save to disk]
  • View 6FUK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FUK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fuk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fuk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FUK
  • Community annotation for 6FUK at PDBWiki (http://pdbwiki.org)

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