6FYI Transferase date Mar 12, 2018
title X-Ray Structure Of Clk2-Kd(130-496)Tg003 At 2.6a
authors J.Kallen
compound source
Molecule: Dual Specificity Protein Kinase Clk2
Chain: A
Fragment: Kinase Domain
Synonym: Cdc-Like Kinase 2
Ec: 2.7.12.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clk2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.444 76.531 111.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand EAE enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structures and feasibility assessment of CLK2 inhibitors for Phelan McDermid syndrome., Lerchner AM, Kallen J, Bergsdorf C, Arnaud B, Bernhard M, Brichet M, Cobos-Correa A, Elhajouji A, Freuler F, Galimberti I, Guibourdenche C, Haenni S, Holzinger S, Hunziker J, Izaac A, Kaufmann M, Leder L, Martus HJ, von Matt P, Polyakov V, Roethlisberger P, Roma G, Stiefl N, Uteng M, ChemMedChem. 2018 Jul 9. doi: 10.1002/cmdc.201800344. PMID:29985556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (6fyi.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 6FYI
  • CSU: Contacts of Structural Units for 6FYI
  • Structure Factors (304 Kb)
  • Retrieve 6FYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FYI from S2C, [Save to disk]
  • View 6FYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FYI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fyi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FYI
  • Community annotation for 6FYI at PDBWiki (http://pdbwiki.org)

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