6FYV Transferase date Mar 12, 2018
title X-Ray Structure Of Clk4-Kd(146-480)Cx-4945 At 2.46a
authors J.Kallen
compound source
Molecule: Dual Specificity Protein Kinase Clk4
Chain: A
Fragment: Kinase Domain
Synonym: Cdc-Like Kinase 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clk4
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
symmetry Space Group: P 43 21 2
R_factor 0.203 R_Free 0.223
length a length b length c angle alpha angle beta angle gamma
66.335 66.335 190.684 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.46 Å
enzyme Transferase E.C. BRENDA

Primary referenceX-ray structures and feasibility assessment of CLK2 inhibitors for Phelan McDermid syndrome., Lerchner AM, Kallen J, Bergsdorf C, Arnaud B, Bernhard M, Brichet M, Cobos-Correa A, Elhajouji A, Freuler F, Galimberti I, Guibourdenche C, Haenni S, Holzinger S, Hunziker J, Izaac A, Kaufmann M, Leder L, Martus HJ, von Matt P, Polyakov V, Roethlisberger P, Roma G, Stiefl N, Uteng M, ChemMedChem. 2018 Jul 9. doi: 10.1002/cmdc.201800344. PMID:29985556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (6fyv.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 6FYV
  • Structure Factors (446 Kb)
  • Retrieve 6FYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FYV from S2C, [Save to disk]
  • View 6FYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FYV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fyv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fyv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FYV
  • Community annotation for 6FYV at PDBWiki (http://pdbwiki.org)

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